Dissertation Archive

Here we have the dissertations of past Ph.D. students from the Bioinformatics program.

2009

Raad Gharaibeh: Ph.D., Bioinformatics and Systems Biology
Studies on the Relationships Between Oligonucleotide Probe Properties and Hybridization Signal Intensities
Library 

2010

Vladyslava Ratushna: Ph.D., Bioinformatics ans Systems Biology
The Effect of Target Secondary Structure on Microarray Data Quality
Library 

Robert Reid: Ph.D., Bioinformatics and Systems Biology
Improving Data Extraction Methods for Large Molecular Biology Datasets
Library 

2011

Luis Gonzalez: Ph.D., Bioinformatics and Systems Biology
A Virtual Pebble Game to Ensemble Average Graph Rigidity
Library

Nina Sanapareddy: Ph.D., Bioinformatics and Systems Biology
Using Bioinformatics to Analyze the Role of Microbial Taxa in Complex Ecosystems
Library 

Melanie Spencer: Ph.D., Bioinformatics and Systems Biology
Stability, Resistance and Change in Mammalian Microbiota and Their Associations With Host Health
Library 

Timothy Tickle: Ph.D., Bioinformatics and Systems Biology
Data Mining the Serous Ovarian Tumor Transcriptome
Library 

2012

Cristina Baciu: Ph.D., Bioinformatics and Computational Biology 
Bioinformatics and Biomolecular Tools for biomarker discovery in peripheral blood lymphocytes from patients with sporadic amyotrophic lateral sclerosis
Library 

Charles David: Ph.D., Bioinformatics and Systems Biology
Time Delayed Dynamical Systems and the Duffing Equation
Library 

Verma Deeptak: Ph.D., Bioinformatics and Computational Biology
Elucidating the Effects of Mutation and Evolutionary Divergence Upon Protein Structure Quantitative Stability/Flexibility Relationships
Library 

Christopher C Overall: Ph.D., Bioinformatics and Computational Biology
Microarray Tools and Analysis Methods to Better Characterize Biological Networks
Library

2013

Saeed Khoshnevis: Ph.D., Bioinformatics and Computational Biology
The Effect of Structure in Short Regions of DNA on Measurement on Short Oligonucleotide Microarry and Ion Torrent PGM Sequencing Platforms
Library 

Jonathan Ward McCafferty: Ph.D., Bioinformatics and Computational Biology
Microbial Contributions to Disease Phenotypes
Library  

Shatavia Sharday Morrison: Ph.D., Bioinformatics and Computational Biology
Vibrio Vulnifcus Virulence and Survival Mechanisms Revealed through Comparative Microbial Genomic Analysis
Library 

2014

Yan Ni: Ph.D., Bioinformatics and Computational Biology
Data Analysis Workflow for Gas Chromatography Mass Spectrometry-Based Metabolomics Studies
Library

Meng Niu: Ph.D., Bioinformatics and Computational Biology
De Novo Prediction of Cis-Regulatory Modules in Eukaryotic Organisms
Library

Jaime Lynn Sheridan: Ph.D., Bioinformatics and Computational Biology
Elucidation of Mirnas in Avena Sativa
Library

2015

Adam Michael Whaley: Ph.D., Bioinformatics and Computational Biology
Genetic Mechanisms of Ozone Tolerance in Soybean and Methods of Evolutionary Distance
Library

2016

Rosario Ivetth Corona de la Fuente: Ph.D., Bioinformatics and Computational Biology
Structural Analysis of Protein-DNA Binding Specificity and its Application to Protein-DNA Docking Assessment
Library

Sajedeh Safari: Ph.D., Bioinformatics and Computational Biology
Evolution of Flavonoid Pathway in Legumes
Library