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Dukka B K.C., Ph.D.
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Dukka B K.C., Ph.D.

  • Postdoctoral Fellow
9201 University City Blvd
Charlotte, NC
Email at uncc.edu: dbahadur
Phone: (704) 687-7897

Websites:

Biography:

Dr. K.C. received his Ph.D. in Informatics (Bioinformatics) from Kyoto University working on protein structure prediction algorithms. He subsequently did a postdoc at Georgia Institute of Technology before joining the Bioinformatics center. His research interests include (but are not limited to) development of computational methods for protein function prediction and protein structure prediction.

Publications


Book Chapters


1. Dukka Bahadur K.C. and Dennis R Livesay, A Spectrum of Phylogenetic-based Approaches for Predicting Protein Functional Sites, In Bioinformatics for Systems Biology, Krawetz S (Ed.) Humana Press, 315-337, 2009.

Journal Publications


1. Dukka Bahadur K.C. and Dennis R Livesay, Topology improves phylogenetic motif functional site predictions, Transactions on Computational Biology and Bioinformatics, In Press, 2009.

2. Dukka Bahadur K.C., Improving Consensus Structure by Eliminating Averaging Artifacts, BMC Structural Biology, 9:12, 2009.

3. Dukka Bahadur K.C and Dennis R Livesay, Improving position specific predictions of protein functional sites using phylogenetic motifs, Bioinformatics, 24:2308-2316, 2008.

4. J.B. Brown, Dukka Bahadur K.C., Etsuji Tomita, Tatsuya Akutsu, Multiple methods for protein side chain packing using maximum weight cliques, Genome Informatics, 17-1, 3-12, 2006.

5. Tatsuya Akutsu, Morihiro Hayashida, Dukka Bahadur K.C., Etsuji Tomita,Junichi Suzuki and Katsuhisa Horimoto, Protein Threding by Dynamic Programming and Clique Based Approaches, IEICE Transactions on Fundamentals of Electronics, Communication and Computer Science, E89-A, 1215-1222, 2006.

6. Dukka Bahadur K.C., Etsuji Tomita, Jun’ichi Suzuki, Katsuhisa Horimoto,and Tatsuya Akutsu, Protein Threading With Profiles and Distance Constraints Using Clique Based Algorithms, Journal of Bioinformatics and Computational Biology, 4:19-42, 2006.

7. Harry Amri Moesa, Dukka Bahadur K.C., Tatsuya Akutsu, Efficient Determination of Cluster Boundaries for Analysis of Gene Expression Profile Data Using Hierarchical Clustering and Wavelet Transform, Genome Informatics, 16(1): 132-141, 2005.

8. Dukka Bahadur K.C., Etsuji Tomita, Jun’ichi Suzuki and Tatsuya Akutsu, Protein side-chain packing problem: A maximum common edge-weight clique algorithmic approach, Journal of Bioinformatics and Computational Biology, 3(1): 103-126, 2005.

9. Dukka Bahadur K.C., Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki, and Asao Fujiyama, Point Matching Under Non-uniform Distortions and Protein Side Chain Packing Based on an Efficient Clique Algorithm, Genome Informatics, 13: 143-152, 2002.

Peer Reviewed International Conference Papers


1. J.B. Brown, Dukka Bahadur K. C., E. Tomita and T. Akutsu, Multiple methods for protein side chain packing using maximum weight cliques, The 6th Int. Workshop on Bioinformatics and Systems Biology, 2006, Boston, USA.

2. Dukka Bahadur K.C., Etsuji Tomita, Jun’ichi Suzuki, K. Horimoto and Tatsuya Akutsu, Clique Based algorithms for protein threading with profiles andconstraints, Proc. 3rd Asia-Pacific Bioinformatics Conference(APBC 2005), 51-64, 2005, Singapore.

3. Harry Amri Moesa, Dukka Bahadur K.C. and Tatsuya Akutsu, Efficient Determination of Cluster Boundaries for Analysis of the Gene Expression Profile Data Using Hierarchical Clustering and Wavelet Transform, 5th InternationalWorkshop on Bioinformatics and Systems Biology(IBSB),2005, Berlin, Germany.

4. Dukka Bahadur K.C., J.B. Brown, E. Tomita, J. Suzuki and T. Akutsu, Large scale protein side-chain packing based on maximum edge-weight clique finding algorithm, Proc. 2005 International Joint Conference of InCoB, AASBi and KSBI (BIOINFO2005), 228-233, 2005, Pusang, Korea.

5. Dukka Bahadur K.C., Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki, Protein Side-chain Packing: A maximum edge-weight Clique Algorithmic Approach, Proc. 2nd Asia-Pacific Bioinformatics Conference (APBC 2004), 191-200, Dunedin, New Zealand.

6. Dukka Bahadur K.C., Tatsuya Akutsu, Protein Side-chain Packing Using an Efficient Clique Algorithm, The 2nd International Workshop on Bioinformatics and Systems Biology, 2003, Dresden, Germany.

7. Dukka Bahadur K.C., Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki, Asao Fujiyama, Point Matching Under Non-uniform Distortions and Protein Side-chian Packing based on an efficient clique algorithm, GIW 2002, Tokyo, Japan.

Peer Reviewed International Conference Posters


1. Dukka Bahadur K.C. and Dennis R Livesay, Predicting protein functional sites with a position-specific MINER, 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada.

Education:

  1. Postdoc (Current Position) March 2007 ~
  2. Postdoc Georgia Institute of Technology - March 2006 - March 2007
  3. Ph.D. Kyoto University - 2006
  4. M.Inf. Kyoto University - 2003
  5. B.E. (Computer science) Kyoto University - 2001

Departments:

Department of Bioinformatics and Genomics